PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g001365m
Common NameCISIN_1g001365mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CAMTA
Protein Properties Length: 1093aa    MW: 122008 Da    PI: 5.8795
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g001365mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11802.9e-56201362118
               CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                        ++ ++rwl++ ei++iL n++k++++ e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+een++
  orange1.1g001365m  20 IEAQHRWLRPAEICEILRNYTKFRIAPESPHTPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENEN 111
                        5679**************************************************************************************** PP

               CG-1  94 fqrrcywlLeeelekivlvhylevk 118
                        fqrr+yw+Leeel++ivlvhy+evk
  orange1.1g001365m 112 FQRRSYWMLEEELSHIVLVHYREVK 136
                        **********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143783.03615141IPR005559CG-1 DNA-binding domain
SMARTSM010764.7E-7818136IPR005559CG-1 DNA-binding domain
PfamPF038592.0E-4921134IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.0E-5509597IPR013783Immunoglobulin-like fold
PfamPF018333.4E-5510595IPR002909IPT domain
SuperFamilySSF812963.92E-17510596IPR014756Immunoglobulin E-set
SuperFamilySSF484034.2E-16697806IPR020683Ankyrin repeat-containing domain
CDDcd002046.49E-12701804No hitNo description
Gene3DG3DSA:1.25.40.208.9E-16703808IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.99712806IPR020683Ankyrin repeat-containing domain
PfamPF127961.0E-6717807IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.351745777IPR002110Ankyrin repeat
SMARTSM002480.024745774IPR002110Ankyrin repeat
SMARTSM00248610784813IPR002110Ankyrin repeat
SuperFamilySSF525409.29E-8915970IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001517919941IPR000048IQ motif, EF-hand binding site
PfamPF006120.067921940IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.126921949IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0033942964IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.091943967IPR000048IQ motif, EF-hand binding site
PfamPF006121.0E-4945964IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1093 aa     Download sequence    Send to blast
MADSRRFALG NQLDIEQILI EAQHRWLRPA EICEILRNYT KFRIAPESPH TPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGEENE NFQRRSYWML  120
EEELSHIVLV HYREVKGNRT NFNRAKVAEG ATPYSQENEE TIPNSEVEGS QSSGFHPNSY  180
QMPSQTADTS LNSAQASEYE DAESVYNNQA SSRFHSFLDL QQPVAEKIDA GLADPYYPSS  240
LTNNYQGKFS VVPGADFISP AQTDKSRNSN DTGLTYEPQK NLDFPSWEDV LQNCSQGVGS  300
QPEALGDIPN QGYDILGEPF TNSFGERKEF GSHLQTRGEW QASRNDSSHL SNWPMDQKVY  360
LDSAHDLTSQ SCEQGAAHDG LLDSLRPPHA HPNMENDVHE QLPNAEHGHL LKSDPESSLT  420
IDGKSFYSSA IKQHLIDGST EGLKKLDSFN RWMSKELGDV KESNMQSSSG AYWETVESEN  480
GVDDSGVSPQ ARLDTYMMSP SLSQDQLYSI IDFSPNWAYV SSEVKVLITG RFLMSQQEAE  540
NCKWSCMFGE IEVPAEIVAG GVLRCHTSSQ KVGRVPFYVT CSNRLSCSEV REFEYRASHI  600
PDVDVADNCG DITSENLRMQ FGKLLCLTSV STPNYDPSNL SDISQLNSKI SSLLKDENDD  660
WDLMLKLTAE EKFSSEEVKE KLVQKLLKEK LQVWLVQKAA EGGKGPCVLD HCGQGVLHFA  720
AALGYDWALE PTTVAGVNIN FRDVNGWTAL HWAAYCGRER TVASLIALGA APGALSDPTP  780
KYPSGRTPAD LASSIGHKGI AGYLAESDLS SALSAISLNK KDGDVAEVTG ATAVQTVPQR  840
CPTPVSDGDL PYGLSMKDSL AAVRNATQAA ARIHQVFRVQ SFQKKQLKEY GNDTFGISDE  900
RALSLVAVKT QKPGHHDEPV HAAATRIQNK FRSWKGRKDF LIIRKQIIKI QAYVRGHQVR  960
KNYKKIIWSV GIMEKIILRW RRRGSGLRGF KSETLTASSS MVATSAKEDD YDFLKEGRKQ  1020
KEERLQKALA RVKSMVQYPE ARDQYRRLLN VVNEIQETKA MALSNAEETA DFDDDLVDIE  1080
ALLDDTLMPN AS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.172300.0callus
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6587498e-65EU658749.1 Sorindeia madagascariensis clone Sorin8 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428204.10.0hypothetical protein CICLE_v10024764mg
RefseqXP_015382833.10.0PREDICTED: calmodulin-binding transcription activator 3 isoform X1
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLA0A067F0090.0A0A067F009_CITSI; Uncharacterized protein
STRINGVIT_07s0141g00250.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86012535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1